PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS03475 (473 amino acids)

SeqID: CA265_RS03475 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3916042: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS03475
MANLADENKFFADVCKNFDSAAQFTNHPEGLLNQIKTCNSVYRFQFPIRRGNGFEVIDAW
RVEHSHHMSPTKGGIRYSEMVNEDEVMALAALMTYKCAIVNVPFGGAKGGIKINTKQYSV
AELETITRRYTTELIKKNFIGPGIDVPAPDYGSGEREMSWIADTYMTMNPGQLDALGCVT
GKPIALHGIRGRKEATGRGVAYAVRECVEVAEDMAKIGFKAGLGDKRVIVQGLGNVGYHS
AKFLAEFGATIVGLCEFEGAIYNPNGLNVDEVFAHRKNTGSILGFPGAKDFKNSMEGLEQ
DCDIIVPAALENQFTELNIRNIKAKIIAEGANGPTTPEAETIFTEMGGIIIPDMYCNAGG
VTVSYFEWLKNLSHVAFGRMENRYAANSNANLINTLENLTGKTILPEHRLMIVKGASEME
LVNSGLEDTMIHSYHEIRETLMNKPATQTLRTAAFVNSIDKIAVSYMNLGVWP