PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS04075 (513 amino acids)

SeqID: CA265_RS04075 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS04075
MFTSDLEKHELIDFLTESPTKEIFHHENEAEYLHAVGKVTQAVKKFLNNNQQPFSGVSPS
KLRPLFDSIEFEKTHDNYDALLKEVEQLYTSHAVAFHHPAYIAHLNCPIVIPAVAAEVMI
SAINSSIDTWDQSAGGTLIEQKLIEWTCDQIGYSKKSDGIFTSGGTQSNLMGLLLARDHY
SITALNHNIKVEGLPQEASRFRIFVSEKAHFSIQKNASLLGLGEKSVIKIKTDRSFRMNT
VLLEDAIKREIAQGNIPIAIVGTAGTTDFGNVDPLKELASISKKYHTWFHIDAAYGCGLL
LTDKYRSLLNGIELAHSVTVDYHKSFFQPVSSSGFLVRDKNFFNLITHHADYLNPKDHDE
DGLPNQVNKSIQTTRRFDALKLWFTLRMMGRNKLGGYFDTIIETAAKIADLLHADSDFEL
MNESDISALVFRYRPKNVQLDVCAMNQYIKKAMFNQGKALVAGTKINQQFYLKFTLLNPL
TTISDIENIIKIIKKHGNEYVRLNQASADFRRN