PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS07125 (235 amino acids)

SeqID: CA265_RS07125 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00221: MIP Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 88909684: Aquaporin Z]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS07125
METSKLSKFSAEFLGTLVLVLMGCGSAVIAGANGTTGVGLLGISFAFGLSVTAMAYAIGH
ISGCHINPAISIGMVIAGRMKIGEAAYYIVAQILGGIVGAFILLQIASGKPEYSLTANGL
GQNGFAALSPQHYSLQAGFIAEIVLTFIFLLVIFGSTSTKNINGGFAGLAIGLSLTLIHI
VGIPVTGVSVNPARSIGPALLVGGQALSQVWLFIVAPVIGAALSALIWKTVLEKS