PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS10595 (458 amino acids)

SeqID: CA265_RS10595 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121466: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS10595
MKKNKLTLFIFLALIAGIALGYILNVNSINVYNQNILTADAKVKSIEVRIAKSTDTTSIG
YTQLKAERKANAKIKKENEDIREKKLEYFTLLSDIFLRLIKMIVAPLVFTTLVVGVAKVG
DIKAVGRIGGKTLGWFLAMSLMSLVLGMVLVNLFEPGRHMKLSLPDQLVNTGIQKAAMSV
KDFIAHVFPKSIAESMSTNEILQIVVFSLFFGVATAAIGDLGQIVIKAFDAIAHVILKMT
GYVMNFAPLAVFGAMTAIVAKQGLNVLNTYAIFIGEFYLGLAILWAVLIFLGFLVLKKRI
FRLVNDMKEPALLAFSTASSEAAYPKTMMLLERFGCKDKIVSFVLPLGYSFNLDGSMMYM
TFASLFIAQAYGIHLGFEQQISMLLILMLTSKGIAGVPRASLVVIAGTIASFNIPEAGLA
LLIGIDPLLDMGRSATNVVGNSIATAVVSKWEGELKES