PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS11665 (806 amino acids)

SeqID: CA265_RS11665 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597444: 2-oxoisovalerate dehydrogenase (beta subunit)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS11665
MPNEKLMTNTIDASELSFNDFKSIVINDYKIAFESRQASVLGRREVLTGKAKFGIFGDGK
EVPQVAMAKAFKNGDWRSGYYRDQTFAFATGISTIKEFFAQLYANPTEGADPFSGGRQMN
CHFATKSVNEDGSWNDLTQIKNCSSDISPTGGQMARLVGLAYASKLFRQNKELDYLKNFS
VNGNEVAFGTIGNASTSEGVFFEAINAAGVLQIPMAISIWDDAYGISVPAKYQTTKEDIS
EVLKGFQRDADQPGYEIYKVKGWDYPALCEVYEKAIHVCRDEHVPVLIHVTELTQPQGHS
TSGSHERYKSKDRLSWETEHDCILKMRAWMLDSAVATEEEIAEIEKEAKVFVRNAQKEAW
NEFLDSIKPEQKQVIDLISGVAKHQPELAKIAASLASTADAQRREVFTAARKAIRLSASF
NSPERNELLAWYKQQAKFNYDRYNSKLHTNGKESPDMIAVVNAAYDEQSKMVDGREVLNA
CFNENFARDPRLVAFGEDLGNIGDVNQGFAGLQAKYGELRITDTGIREMTIMGQGIGLAM
RGLKPIAEIQYLDYLIFALNVLSDDLASLSYRTKGIQKAPVIVRTRGHRLEGIWHSGSPI
SMILGALRGMHLCVPRNMTQAAGMYNTLFRADEPAVVIECLNGYRLKEKLPVNVGEFTVP
LGKAEVLEEGTDITVISYGSSLRIVQEAAEELSLLGISVEIIDPQTLLPFDTTQVCVNSL
AKTNKLLVVDEDVPGGASAYILQKVLEEQKGYFHLDGQPKTLSAKAHRPPFGSDGDYFSK
PSVDDVIETIYQMMHDANPVKYPSFF