PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS14515 (418 amino acids)

SeqID: CA265_RS14515 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS14515
MKTTQNISHFKQKALHWANQFEVCCFLDSNNYKDAYSAYDFIIAVDADHELKCATGNAFD
QLKSFYALHKQWIFGFFGYDLKNEIEDLHSNNSDHLNFPDLYFFVPKYLIAFKKGNAEVL
IGPESILAEIDSFQLKTEIQSKKAKVAQRLSKDQYVQKVEALRDHIIRGDIYEVNFCQEF
FAENAEIDPVQTFEALNSVSPTPFAGYFKVQGNYILSATPERFLCKRGSKLTSQPIKGTA
KRSLDPMEDEAIKLQLRNDIKEQAENVMIVDLVRHDLTKSAVKGSVTVDELFGIYSFPQV
HQMISTISCELNPAIHFIDAIKNAFPMGSMTGAPKVKAMKLIEEYEVTKRGIYSGSFGCI
SAAGDFDFNVVIRSILYNAASNYLSFQVGGAITYQSNAVLEYEECLLKASAILKVLEG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory