PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS14780 (1129 amino acids)

SeqID: CA265_RS14780 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS14780
MQQVEIYKPKNKIRFVTAASLFDGHDATINIMRRILQSSGAEVIHLGHNRSVDEVVNCAI
QEDVQGIAMTSYQGGHIEYFKYMYDLLQERGSGHIKIFAGGGGVILPSEIEELQAYGISK
IYSPDDGRKMGLQGMINDMLVQTDFITKASITNELETIPSKDIKAIAGAITVAENDPEGA
QKFVDELKKLSKNNTAPILGITGTGGAGKSSLVDELVRRFLVEVKDKTLAIISVDPSKRK
TGGALLGDRIRMNAINNPRVYMRSLATRQANLALSKNVQESIDICKAAGYDLIIVETSGI
GQSDTEITEHCDVSLYVMTPEFGAATQLEKIDMLDFADLVAINKFDKRGALDALRDVRKQ
YKRNHNIFDAKDDEIPVYGTMASQFNDPGMNNLFVALMEQIKVKTGTDFKAKMELTSDQS
EKIYIIPPDRIRYLAEIAEASQMYNEWVDKQATIARKMYQLKGVIDLLSEANLPDKSKVS
PTGGDLEGVYAFFEEQLDGECKRLLRQWPDTKRAYKEEFFIYKVRDKEIKQPLFYESLSK
LNIPKVSLPRYEDWGDILRWLLTENLPGEFPYAAGVFPLKREGEDPTRMFAGEGGPERTN
KRFHYVSLGQPAHRLSTAFDSVTLYGEDPHIRPDIYGKIGNSGVCIATLDDAKKLYSGFD
LCAPSTSVSMTINGPAPMLLGFFMNAAIDQQCEKYIIENDLTKEVEAKIDAIYQAKNIPR
PSYNGTLPEGNDGLGLMLLGVTGDQVLPADIYAKIRTKAISSVRGTVQADILKEDQAQNT
CIFSTEFALRMMGDIQKYFIDEKVRNFYSVSISGYHIAEAGANPISQLAFTLSNGFTFVE
YYLSRGMHIDDFAPNLSFFFSNGIDPEYAVIGRVARRIWAKAIKNKYKGNDRSQKLKYHI
QTSGRSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLI
INRELGLAKNENPLQGAFIIEELTDLVEDAVLAEFKRINDRGGVLGAMETMYQRGKIQEE
SLYYETLKHTGEYPIVGVNTFLNKNGSPTIVPGEVIRATEDEKQYQISALQKFQDRNADR
AVDLLKQLQKSAIAGDNIFEQLMEVCKICSLGQISKALYEVGGQYRRNM