PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS15110 (252 amino acids)

SeqID: CA265_RS15110 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS15110
MSKIALITGATSGIGEACAQTFAQQGYNLILLARREDRLAKIAHHLEDKYAITIKQVFAD
VRDKESLAAALEVLPAEWKKVDVLINNAGLSQGLDPIDKGDTNDWDTMIDTNVKGLLYVT
KIVSNWMIPNQSGHIINIGSIAGKEVYPNGNVYCASKHAVDALSKGMRIDLLPHGIKVTE
INPGMVETEFSVVRFKGDEDRAKKVYENLEPLIADDIADAIWYVVSRPKHVNINDMLIMP
TAQATATIINRV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory