PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS15145 (649 amino acids)

SeqID: CA265_RS15145 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 85700297: Inner membrane transport protein yeeF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS15145
MFEKLFRKKSISKILQDAAKGYGDHENTLHKTLGVRDLTAFGIAAIIGAGIFSTIGKASA
DGGPAVIFLFIFTAVACSFAAFAYAEFASMVPVSGSAYTYSYVAFGELVAWIIGWSLIME
YSIGNITVAISWSDYFTGLLSTIKIPPLGIEGIHVPDWMTMDYLSAYNGHKHAEALLAAG
KNLADLDSATALANNAWLTAPKIGSFHLVADIPALGIIILITWLIYRGMKESRNASNAMV
VVKLAVILLVLAVGIFYVDTKNWDPFAPNGVSGVLKGVSAVFFAYIGFDAISTTAEECKN
PQRDLPRGMMWAIIICTILYVAIALVLTGIVKSDTLAVGDPLAFVFDQINLKLMSGIIAV
SAVFAMASVLLVFQMGQPRIWMSMSRDGLLPKSFSKIHPKYKTPSFATIVVGFVVAVPSL
FMNLTIVTDLCSIGTLFAFVLVCAGVLVLQNRPDVQRGKFKIPYVNSKFIIPVVLIATII
FAFTKYGKETKAFFFNSPKTIQTVTFVTSLSGDELKIVKEEIVKNAAPQIILAEKVDAES
YLSALPADRYEQFISASKVPVEKKYESGWGLFKHKIPMWIFLIICVIITYYCITKNLSLI
PVLGLISCLYMMCELGISNWIGFGIWLVVGLVVYFAYGYRHSKLAKIES

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory