PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS16400 (921 amino acids)

SeqID: CA265_RS16400 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS16400
MSIYNDYIQEIEDRKAQGLHPKPIDGAELLSEIITQIKNVNNINREEAVNFFIYNTLPGT
TAAAAVKAQFLKEIILAEVIVAEITPDFAFELLSHMKGGPSIKVLLDIALADNGDKAKKA
ADVLKTQVYLYDADTDRLKDAYNNGNEIAKEILESYAKAEFFTKLPEVAEEIKVVTFIAG
IGDISTDLLSPGNQAHSRSDRELHGKCMITPEAQEEIKALQAQHPDKSVMLVAEKGTMGV
GSSRMSGVNNVALWTGKRSSPYVPFVNIAPIVGGTNGISPIFLTTVDVTGGIGIDLQNWV
KKTDENGNVIRNEKDEPILEQRFSVETGTVLTINTKTKKLYNGEQELIDISKALTPQKME
FMKAGGSYAIIFGKKIQTFAAKTLGIEASSVFAPAKEVSYEGQGLTAVEKIFNRNAVGLT
QGKVLHAGSDVRVEVNIVGSQDTTGLMTAQELEAMAATVISPIVDGAYQSGCHTASVWDK
KAQANIPKLMKFMNDFGVITARDPKGEYHSMTDVIHKVLNDITIDEWAIIIGGDSHTRMS
KGVAFGADSGTVALALATGEASMPIPESVKVTFKGLMKEHMDFRDVVHATQLQMLQQFDG
ENVFQGRIIEVHIGTLLADQAFTFTDWTAEMKAKASICISQDDTLIQSLEIAKNRIQIMI
DKGMDNHNQVLQGLINKANKRIEEIKTGIKPALMPDDNAKYYAEVVIDLDLIEEPMIADP
DVNNADVSKRYTHDTIRDLTFYGGDKKVDLGFVGSCMVHKDDLKIVSQMLKNVETQTGKV
EFKAPLVVAAPTYNIIDELKAEGDWEYLQKYSGFEFSDALPKSAARTEYENIMYLERPGC
NLCMGNQEKAAKGDTVMATSTRLFQGRVVEDKDGKKGESLLASTPVVVLSAILGRIPSIE
EYKVAVEGINLTKFTPISTKQ