PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS16405 (759 amino acids)

SeqID: CA265_RS16405 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS16405
MAFDIDMIKKVYANFGSRVEAARKVVGRPLTLSEKILYAHLWDGDPKTAFKRGSDYVDFA
PDRVAMQDATAQMALLQFMQAGRPQVAVPSTVHCDHLITAKEGAAIDLPHAKTESAEVFD
FLSSVSNKYGIGFWKPGAGIIHQVVLENYAFPGGMMIGTDSHTVNAGGLGMVAIGVGGAD
ACDVMAGLPWELKFPKLIGVKLTGKLNGWTAAKDVILKVAGILTVKGGTGAIVEYFGDGA
TSMSCTGKGTICNMGAEIGATTSTFGYDESMERYLRATGRNEVADEANKIAAYLTGDAEV
YADPENYFDQVIEIDLDTLEPYLNGPFTPDLATPVSQMKVEAEKNGWPLKVEWGLIGSCT
NSSYEDLSRAASIANQAIAKGLVTKADFGINPGSEQVRYTADRDGFLKTFEDLNATIFTN
ACGPCIGMWDRTGAEKAEKNTIVHSFNRNFAKRADGNPNTFAFVASPEMVAAIAISGNLG
FNPLTDTLTNDKGEQVKLDPPTGFELPTKGFAVEDAGYQAPAADGSSVQVLVSPTSHRLQ
LLDPFTPWEGTDLQGLKLLIKAKGKCTTDHISMAGPWLKFRGHLDNISNNMLIGAVNYFN
DKTDNVKNELTGEYGPVPATQRDYKAAGLGSIVVGDENYGEGSSREHAAMEPRHLGVRAV
LVKSFARIHETNLKKQGMLGLTFADKDDYDKILEDDTIDILGLTEFTPDQPLTLVLHHAD
GTQESFPVNHSYNAQQIDWFKAGGALNIIRAEAAAKAAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory