PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS16425 (445 amino acids)

SeqID: CA265_RS16425 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584838: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS16425
MINASDFGQNFLWGVATAAAQIEGTATQYGKGPSIWDTFTAKNGKIKKNHKLDPACDFYH
RYAEDLALVKLLGFKVFRFSIAWSRILPAGRGEINQEGIRFYHNLIDECLTQGITPYVTL
YHWDLPQALEDEGGWTSFSINAAFNAFVSICAIEYGDKVKNWIVLNEPFGYTSLGYMLGV
HAPGKTGLGNFFSAVLHTALAQADGGKILRAEISKANIGTTFSCSEIIPSTQSDSDVLVA
RRVDCLMNRLFVEPTQGMGFPTANWDALEKFQIEYGTWRLHERMKFDFDFIGLQNYFPLV
VKYNAFIPVIQAWEVKAKSRKKPHTAMGWEVNADSFYNIVKQFAAYPNIKNILITENGAA
YHDKLINGKVEDPERIEYFKLYLKALLKLKKEGINVTGYMAWTLMDNFEWAEGFTARFGL
IYNDFKTQERSIKDSGYWWQNFLKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory