PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS17230 (319 amino acids)

SeqID: CA265_RS17230 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS17230
MKVFISGNIASVGIKELEENNITITQWKENRQITAEELIAACQDQDALISVGPNKINAAF
LKACSHLKVIALHSVGYDQVDVAAAKKLNIPIGNTPGVLSKATADTAFLLMLAVSRKAFF
AHKKIIKGEWKNYEPTPELGIEVNGKTLGIFGLGKIGLEMAKKCIGAYQMPVIYHNRSRN
EEAEKEIGAKYVSFETLLAQSDVLSVHTALTPETKDKFTLDVFKQMKANSIFINTARGAI
HNEKDLIKALEKKIIWGAGLDVTNPEPMDKNNPLLSMENVAVLPHIGSATEETRAAMAQI
IVKNIIAGLNGEKLPFEVV