PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS17845 (1010 amino acids)

SeqID: CA265_RS17845 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS17845
MESNKKYWKGLEEYNNTPDFVKNNKNEFAEPLPIEDVLNEAGLSTVTPRRDFLKALGFGL
GAVTLAACQTAPVHKSIPYLVKPEEVTPGIPNYYTSSFNGQSILVKTREGRPIKIEPNPN
AGQFNCGTDARAQASVLDLYDVSKLKAPALVKDGKVEETTWAKIDSFVKGELAKAQAGGK
KIRIVSSTVNSPSTNAVIAQFIAKYPAAKLVQYDAVSYTGIIQANQNSFGKAVLPKYNFD
KADLIVSFSADFLGTWISGEEFTAQYTANRNYKSLENKKMSRHIQFESGMSLTGTNADTR
VPVKLSEEGPALIALYNAITGSALPGGTLGNNTTADKVIKLVAKELVQAKGKGLVVCGSN
DVSTQILVNAINAAIGSYGTTIDLDNPCYLYAGNDAEFNGLVAEMSRGEVGAVLFLNSNP
VYDAANAKAFTDALAKVPAKISFSDRADETATACDAIAINHNYLESWGDANAYEGYYSIV
QPTINPVFNSRQAEESLLTWADAPVKDYYQFVRSNWEAKMLPAVGLKWEEVLEKGVVTAT
AKTAGAYSFTQSLAQVATSIVSSSKALDKDIQLQVYENIPMRDGKNANNAFLQELPDPVS
KVTWDNYVALAPKFAEKLKVKEFDVVTVKASNGYSVDLPVLIQPGQAQQTASIALGYGRT
KVGKAGNDVGKNAFPFVSFINGTFQYATTVTITPTGGYYELAQTQTHHSFEGRAVIKEAT
FKEYLKNPGAGNEKGEHKDYDLWDQYEKPGNNWVMAIDLNACTGCGSCIVACNVENNIPV
VGRDEVRRRREMHWIRIDRYYSYETKDGDVTREKEIAKLEDLDHVSVVHQPMLCQHCDHA
PCETVCPVLATVHSSDGLNHMAYNRCVGTRYCANNCPYKVRRFNWFNYWNDSRFDNYLNN
EFTQLVLNPDVTTRSRGVMEKCSMCIQRIQGGKLQAKLEKRPLKDGDIKMACQEACSANA
IVFGDANDPNSEVSKALRSERIYYVLEEINVKPGIGYMTKIRNTDTTVQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory