PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS18365 (446 amino acids)

SeqID: CA265_RS18365 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600629: probable biotin carboxylase subunit of a transcarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS18365
MFKKILIANRGEIALRIIRTCKEMGIKTVAVYSTADRESLHVRFADEAVCIGPPPSKDSY
LNIPNIISAAELTNADAIHPGYGFLSENAKFSNICREYNIKFIGATPEQINGMGDKASAK
ETMKIAGVPTIPGSEGLLTSVKEGIAIANEMGYPVILKATAGGGGRGMRVVWKDEDFENA
WDSARQESGAAFGNDGLYLEKYIEDPRHIEIQIIGDQFGKACHLSERDCSIQRRHQKLVE
ESPSPFMTDELRVRMGEAAIKGAMAVNYEGAGTIEFLVDKHRNFYFMEMNTRIQVEHPVT
EEVINFDLIKEQIKVAAGIPISGKNYFPDMHAIECRINAEDPANNFRPSPGKITNFHSPG
GHGVRVDTHVYAGYSIPSNYDSMIAKLICVAQTREEAICTMERALGEFVIEGVKTTIPFH
LQLMKDPNFRAGNFTTKFMETFEFSE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory