PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS18405 (658 amino acids)

SeqID: CA265_RS18405 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597444: 2-oxoisovalerate dehydrogenase (beta subunit)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS18405
MQFKRGDKDDKFLLNLYRRLLYPRMVEDKMLKLLRQGRIGKWFSGIGQEAIAVGSTLAMQ
SDEYILPMHRNLGVFTSRDIPLKKLMAQWQGKITGFSKGRDRSFHFGTQEYKIIGMISHL
GPQMALADGIALADVLRNQPHATLVYTGEGATSEGDFHEAVNVAAVWNLPVIFLIENNGY
GLSTPKSEQFRCKNLVDKAIGYGVEGIQIDGNNILEVYDTINQLAMEIRKDPRPVLVECL
TFRMRGHEEASGTKYVPQELFDEWEKKDPLNNYEAYLIEQGVLTPDTVIDIKIQVKRDIE
LEIEEAFNEDEPIANADQEETDMYFPYRQQVIQPDESSTEKRYLDAITDGLDLAMQKYPN
LVLMGQDIADYGGAFKITDGFTAKYGRGRVRNTPICESAIVGAGLGLSINGYKAVVEMQF
ADFVTVGFNQIVNNLAKTHYRWGEKADVVVRMPTGAGTGAGPFHSQSNEAWFTKTPGLKI
VYPAFPEDAKGLLLAAIEDPNPVLYFEHKYLYRSLSAPVPDGYYTTEIGKAVRLAEGDKF
TIITYGLGVHWALDYMEQYPESGATLIDLRTLQPWDKETVSAAVKATGRVLILHEDTLTN
GFGAELSAWIGEHCFAYLDAPVMRCASLDTAIPMSKILEEDFLAKARLAETIDKLLKY