PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS18485 (443 amino acids)

SeqID: CA265_RS18485 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS18485
MKIWQKNIDVNQFVESFTVGKDRELDLQMAKFDVLGSLAHTQMLETINLLTAEELKTVQH
ELKNIYAEIEAGNFTIEDSVEDVHSQVEWLLTQRIGEAGKKIHSGRSRNDQVLVDLKLFF
RACIEDMVGQTSTLFNQLIELSNTHKDKLVPGYTHLQIAMPSSFGLWFGAYAESLADDME
LMLAAWKICNKNPLGSAAGYGSSFPLNRTLTTHLLGFETLNYNVVYAQMGRGKTERILAQ
AMSAVAATLAKMAMDVCLFINQNFGFISFPAELTTGSSIMPHKKNPDVFELIRSRCNKIQ
ALPNEIAMMITNLPSGYHRDLQLLKENLFPAITSLNECLEIATFMFQNITIKDDILKDKK
YDYLFSVEVVNDLALQGVPFREAYKIVGEQIENGSFAPSGQIHHTHEGSIGNLCNEQISA
AMQAVLSQFGFGKVNKAIEDLVK