PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS19300 (399 amino acids)

SeqID: CA265_RS19300 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 8472786: Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS19300
MSIKKYDIIVVGAGLVGLSTAYQLKIAQPELNVLILDKEDGVAKHQSGHNSGVIHSGIYY
KPGSLKAQNCISGYQSIIEFAQQHEIPYDICGKIIVATDQKELPGLNNIYQRGIENGLKG
LKRLSAAESREIEPHCAALESIFVPQTGIIDYPKMAEKILELFMALGGEISFNQEVNKIQ
QDSKCIIVKTNLEVYSTVKLVSCGGLFSDRIASLTEDDNNLRIIPFRGEYYKLKTERESL
VKHLIYPVPDPEFPFLGVHFTRMIGGGIEAGPNAVLAFKREGYKFSDFSLKDMGDTLAWP
GFWKIVAKYGQTGMGEIYRSLSKAAFTRSLQKLIPEINQSDLVEGGAGVRAQACDKKGNL
IDDFNILQNANIIHVRNAPSPAATSSLSIGKLISDKILN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory