PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS19585 (562 amino acids)

SeqID: CA265_RS19585 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS19585
MADVIKMPKMSDTMTEGVLAKWHKKVGDKVKSGDVLAEVETDKATMDMESYWDGTLLYVG
VEEGTAVPVDAIMAVIGKEGEDYKAALEAEQSGSQESGSPKSERKDEAPKAEEKKEEAPA
QGGGLSEEELAAKGVTVIRMPLLSDTMTEGVIAEWHKKVGDKVKDDDVLADVETDKATME
VMGYATGTLLHIGVEKGAAAKVNGIIAIVGPEGTDVSGILAGGSAPAPKAESAEAPKAEK
SATVAEIETPRTSSCGTTTDNGDSRVKASPLAKKIAKDKGIDLAQVAGSAEGGRIIKKDI
ENFKPSAAPAKAESASAPAAEKAAAPAPVIPQYVGEVKFTEAPVSQMRKVIAKRLAESLF
TAPHFYLTISIDMDNAMAARTAINAVAPVKVSFNDIVIKAVAVALKKHPAVNSSWGGDKI
RFNEHTNIGVAMAVEDGLLVPVVRFADGKSLSHISAEVKDFGGKAKAKKLQPADWEGSTF
TVSNLGMFGIDEFTSIINSPDGAILSVGAIQQVPVVKNGAVVPGNVMKLTLGCDHRVVDG
ATGAQFLQTLKGLLEEPIRLLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory