PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS19710 (494 amino acids)

SeqID: CA265_RS19710 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16079931: ribulokinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS19710
MYLLGIDLGTSSIKVAVVDATTQRNVASAQYPEEETAIKSLQSGWAEQSPNDWWQNVQQA
ILKLNSTGLFDPKEIKAIGIAYQMHGLVVVDKNQEVLRDSIIWCDSRAVELGNGAFEAIG
NEKSLKHLLNSPGNFTASKLAWVKANEPDIYSRIDKIMLPGDFIAMKLTGEITTSISALS
EGIFWDFENHEISKDVMNYYSISVDLIPTIKPLFSEHGYLKTAIAQALGLTTGIPVAYKS
GDQPNNALSLNVLKPGEVAATAGTSGVIYGISDGLTYDKQSRVNTFAHVTFTEEQKHTGV
LLCINGTGSMYRWAKHNFAPQSTYAELNNLASKAPIGSNGLKVLPFGNGAERMLNNKYTG
AQLLGIDLNRHNPSDIFRAVQEGIAFSFRYGLDIMRENGMKPKVIRAGRANLFLSDVFAQ
TFVDVTGIPVELYENDGSVGAGIGAGIGAGIFKSAEEAFSNHEVIKTLMPQHPAAYEPIY
QDWKEILEKQLAMG