PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS20080 (945 amino acids)

SeqID: CA265_RS20080 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS20080
MPKDTSIRSVLIIGSGPIVIGQACEFDYSGSQAALSLKEEGITVSIINSNPATIMTDKVI
GDHVYLRPLTVDSIEVILQEHIDSADLPKIDAVLPTMGGQTALNLCKEAEERGVWEKYGV
KVVGVDVAAIEKTENREAFRQLMVDIGVGVAESKIANSFLEGKEAAQEIGYPLVIRPSYT
LGGSGGGFVHKKEEFDAALKRGLEASPTHEVLVEKAVLGWKEYELELLRDSNDNVIIICS
IENFDPMGIHTGDSITVAPAMTLSDRCYQEMRNQAIKMMRAIGNFAGGCNVQFSVNPVDD
EIIAIEINPRVSRSSALASKATGYPIAKIAAKLAIGYNLDEIENQITKTTSAYFEPTLDY
VIVKVPRWNFDKFKGANKELGLQMKSVGEVMAIGRTFIEALQKACQSLEINRAGLGADGR
QVRNIEEIMDGLEHASWNRLFLIKDAMAMGVPLESIRKVTKIDKWFLNQIQELVLLETEL
KRYSLNNIPQDFFVTLKQKGFSDIQIAWLLGNVTEDEVYDRRKALGINRVYKMVDTCAAE
FPAKTPYYYSTFEEENESVPSDRKKVIVLGSGPNRIGQGIEFDYSCVHGLLAAKETGFEA
IMINCNPETVSTDFNMADKLYFEPVFWEHVREIIELEKPVGVIVQLGGQTALKMAEKLTE
KGIKIIGTSFENMDIAEDRGRFSDLLKDLDIPYPKYGVAENAEEAIVVANEVGYPVLVRP
SYVLGGQGMSIVINDEDLEKAVVKLLGDLPGNRVLIDHFLDRAEEAESDSISDGEDVHIV
GMMEHIEPAGIHSGDSFAVLPTFSLSETVTKAMEEYSIKIAKALDVRGLLNIQFAIKDEK
VYVIEANPRASRTVPFIAKAYDVPYINIAAKIMLGVAKLKDFTIVRKLEGYAIKEPVFSY
EKFPEVAKELGPEMKSTGEAIRFIKDLEDPYFRKLYKDKSMYLSK