PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS23555 (455 amino acids)

SeqID: CA265_RS23555 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS23555
MSRKLLLEHINVPGINTLEVYRQKGGYRAVEKALKTLTPEEIVEEVKKSGLRGRGGAGFP
TGMKWSFLAKPEGVARYLVCNADESEPGTFKDRYLMTYIPHALIEGMIVSSFALGAKVSY
IYVRGEMMPQIRILEKAIAEAKAAGWLGKNILGTGYDLELYVQPGGGAYICGEETALLES
LEGKRGNPRIKPPFPAIAGLYGCPTVVNNVESIAAVVPIINDGGDEYAKIGIGRSTGTKL
ISASGNLVKPGVYEIELGLPVEEFIYSDEYCGGIANGKQLKATVAGGSSVPILPANLTLK
YANGEPRLMSYESLSEGGFATGTMMGSGGFIAFDEDQCIVRNTWNFSRFYHHESCGQCSP
CREGTGWMEKVLHKIEHGHGSMEDVDLLWDIQRKIEGNTICPLGDAAAWPVASAIRHFRD
EFEWHIKEPVKSQSQNYGIANYATPIEKAPVTEEK