Running PSORTb v3.0 on CA265_RS23900 (394 amino acids)
SeqID: CA265_RS23900 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Extracellular [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Extracellular 9.52 Cytoplasmic 0.34 Periplasmic 0.11 CytoplasmicMembrane 0.02 OuterMembrane 0.01 Final Prediction: Extracellular 9.52 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>CA265_RS23900 MIKNKIQELASNIFNDVVGYRQHIHANPELSFKEFETSLFIKDKLKKWGIEYTDCANTGV VGLIKGNLPSDQVIALRADMDALPIHETNDKPYRSKNHGVMHACGHDVHTSSLLGTAHIL NQLKDEFGGTIKLIFQPAEELLPGGASIMIKEGVLENPKPNAIVGQHVMPLIDAGKVGFR SGIYMASTDELYVTVTGKGGHGAQPHQNIDPVLIASHIIVALQQIVSRNADPRLPSVLSF GKVIANGATNVIPNEVKIEGTFRTLDENWRDEAHKRMKKMAEGMAESMGGSCDFDIHRGY PFLINEEKLTANARAFAEDFLGKENVVDLDIWMAAEDFSFYSQVTDACFYRLGTGNAAKD TQYSVHTPRFDIDEDALKISTGLMAYIALKQLGN
Lawrence Berkeley National Laboratory