PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS23900 (394 amino acids)

SeqID: CA265_RS23900 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          9.52
    Cytoplasmic            0.34
    Periplasmic            0.11
    CytoplasmicMembrane    0.02
    OuterMembrane          0.01
  Final Prediction:
    Extracellular          9.52

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS23900
MIKNKIQELASNIFNDVVGYRQHIHANPELSFKEFETSLFIKDKLKKWGIEYTDCANTGV
VGLIKGNLPSDQVIALRADMDALPIHETNDKPYRSKNHGVMHACGHDVHTSSLLGTAHIL
NQLKDEFGGTIKLIFQPAEELLPGGASIMIKEGVLENPKPNAIVGQHVMPLIDAGKVGFR
SGIYMASTDELYVTVTGKGGHGAQPHQNIDPVLIASHIIVALQQIVSRNADPRLPSVLSF
GKVIANGATNVIPNEVKIEGTFRTLDENWRDEAHKRMKKMAEGMAESMGGSCDFDIHRGY
PFLINEEKLTANARAFAEDFLGKENVVDLDIWMAAEDFSFYSQVTDACFYRLGTGNAAKD
TQYSVHTPRFDIDEDALKISTGLMAYIALKQLGN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory