PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00021 (730 amino acids)

SeqID: CCNA_00021 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00021
MNAPVDPKGLKAIQPSRRDVVVASTMVGGALLVGCSPADLMSAGSKVEVGAFGPFIKIAP
DGVVTVISKHIEFGQGNHAGLAAIVAEELDADWSKVKVEQAPANAKLYANGNMGAQLTGG
SSAISNSWDQLRKAGAGARAMFVQAAANRWNVPVGEITVKDSVLAHTSGKTAIFGELLSD
AAKVNPPTDPKLKDPKAFTLIGSDRVRRKDSQAKSDGTALYTQDVRLPDMLTAMVAHPPR
FGGKVKSFDATEAKKVAGVVEVFEIPTGIAVVAQNTYAARMGREALKVEWDEEKAEKRGS
PAIIQGYRDVLSGKDASVKWEPFDQRGDAAALETAKGADVVELNYEFPYLAHATMEPMNC
VAAVDGNKVKLTFGSQGQTLDQLNVAKVVGCLPGSVEIETLFAGGSFGRRATFQSDYAVE
CVHIAKKVGKGRPVKLVWTREDDMRSGYFRPIVLHALKVKLDKDGLPAAWRHRIVTQSIM
KGAPMPMGKGPDSSAFEGINDSPYLKATPVVDAQVAFPDIGVPVLWWRSVGATHTAFVME
HTIDQLAAKAGKDPVAYRRAIYTKAGAERHLAVLNLALEKAGPKATAGWTRGVAVHESFG
SVVAQIAEVKLENGAPRVGRVVTAIDCGVAISPDQIAAQMEGGTCYGLSAALFGEVTLTD
GQVDQTNFDGYRVLRINEAPSVETHIVPSGNPPSGVGEPGTPVIAPAVANALFALNKAAT
SRLPFVRSEA