PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00294 (274 amino acids)

SeqID: CCNA_00294 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34582384: Phosphate import ATP-binding protein pstB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00294
MTVQSPDDSTRAPATSTAAPATADPKIKARGVKVFYGDKQALFDVDLDIPAKSVTAFIGP
SGCGKSTFLRCINRMNDTIPSARVEGSILIDGADVNAKSVDPVVLRSRVGMVFQKPNPFP
KTIFENVAYGPRIHGLATGKAELEAIVESSLKKAGLWNEVADRLHQPGTGLSGGQQQRLV
IARAIAVSPEVILMDEPCSALDPIATAKIEELIDELRSQFCIVIVTHSMAQAARVSQRTA
FFHLGKLVESGPTEEMFTNPRDSRTQDYITGRFG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory