PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00830 (549 amino acids)

SeqID: CCNA_00830 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00830
MEEAMGMSRFATAVGLALALVCGPLASGAHAADAAMPQLVTKDGRHALMVDGAPFLMLAA
QVNNSSAWPSQMAKVWPAIEKVGANTVQVPIAWEQIEPVEGQFDFSYLDLLLEQARERKV
RLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRLIKDDGERSYSMSPLAKSTLDADRKAFVA
LMTHLKAKDAAQKTVIMVQVENETGTYGSVRDFGPAAQKVFNGPAPATLVKAVGAKPGTW
SQAFGKDADEFFHAWHIGRFVDQVAAGGKAVYPLPMYVNAALRDPIKPGDPKTYSAGGPT
DNVIGVWQAAAPSIDLIAPDIYMKESVKYEAVLGHYARPNNALFVAETGNDPAYARYVFS
TLGKQGIGWSPFGMDYTGYGNYPLGAAKVDEALIEVFAANYRLLAPMARELARLSFEGKV
WGGAEPDDRAAQTTTMGDWTVSLRYGKWQFGASDWTWLKDRPPGPQGPEGGGLVAQLSPN
EFLVTGRNVRVEFGRATADGKPMMMARVEEGHFENGQWVFDRLWNGDQTDYGLNFTGGSQ
ILRVKLATY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory