PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00938 (395 amino acids)

SeqID: CCNA_00938 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1174681: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00938
MSAADPVVIVAYARTPMGGFQGALGGVKATDLGATAVKAAIERAGVAGDKVEQIIMGCVL
PAGLGQAPARQAALGAGLPLSVEATTVNKMCGSGMQAAIMAHDALAAGSVDVVVAGGMES
MTGAPYLMSKHRAGARIGHDQMWDSMYLDGLEDAYTPGKLMGAFAEDSAQTYQFTREAMD
DYATRGLMKAKAAVESGAFKAEITPVSVVTRKGTEVVDTDEQPGKADPAKIPTLRPAFSR
DGGVTAANSSSISDGAAALVMTRESVAKALGLPILAKVVSHAAHAHEPGLFTTAPVPAMQ
KALKKAGWSVADVDLFEVNEAFAVVAMIAQKELGIPDDKLNVNGGACALGHPIGASGARI
LCTLINALQSRGGKKGLASLCIGGGEATAMAIELV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory