PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01018 (307 amino acids)

SeqID: CCNA_01018 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 120937: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01018
MIRIGLVGLGKIAHDQHLPALAGDPRFSLVAAASHGRPTHGDLPVFHDIDDLLANGPALD
AVALCTPPQVRRETALAALRAGKHVFLEKPPGVTVGEVHELAAVARDQGVTLFTSWHSRF
AAGVPQAKAWLAKRRLRKLAIEWREDVRRWHPGQAWIWQAGGMGVFDPAINALSILTEIM
PEEVFVTGAKLQVPENVQAPIAGHVDITTLSGVPVTADLDFLQTGPQTWDITAWTDDGVL
KLSLGGAELTIDGQAIPVGENREYPGLYDRFATLIAEGRSEVDVRPLSLVADAFLVGDRE
RVEAFVE