PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01161 (448 amino acids)

SeqID: CCNA_01161 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 729607: Proton glutamate symport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01161
MAATQTKSSRFISGFGAQVLIAMVAGLGLGLLARQLGPAEGQAGYVLAETLRQVGQIFVQ
LLRVLVPPLVFTAIVASIANIAQMQNAARLVWRTLFWFAVTALISVVIGIALGLVLQPGL
HASLDAAAAKAPKTHGSWLDFLTGLVPVNILGLAASTKISDAGAASTSLSFNVLQIVVIS
LVTGVAALKVGEAGEAFLKFNASALAIVRKVLWWVIRLTPIGTVGLFGNAVAQYGWTTLG
QLGAFTVAIYAGLGLVLLVVYPVLLALNDLNPIRFFQGAWPAIQLAFVSRSSIGTLPVTE
TVTETRLGVPRAYAAFAVPLGATTKMDGCAAIYPAIAAIFVAQFFGVHLVWSDYLLIVFV
SVIGSAATAGLTGATVMLTLTLSTLGLPLEGAGLLLAIDPILDMGRTAVNVAGQALVPTL
VAKREGILDLEAYNRPGSHADAAFHAAE