PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01191 (411 amino acids)

SeqID: CCNA_01191 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 120593: L-fucose-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01191
MTQTVSDASRDPRLIRILTYLMFMMFAMTTDSVGVIIPHVIKTFDLGMAAAGSFHYASMT
GIALGGVCLGFLADRLGRKATIVLGLVAFAVTAFLFAVGKDFGFFVALLFLSGLAIGVFK
TGALALIGDISSSTRAHTATMNMVEGFFGLGAILGPAIVTALLAQGASWKWLYVIAGALC
VLLIIAALNVRYPQTPPAAQQKLDPRVTLAMFGNPYALAFSFAIMLYVGVETAIYVWMPT
LLADYKGPAVLLAAYALSVFFILRAAGRFLGAWLLNRLSWTQVVAICSVAILICFAAALA
GGRAVAVYSLPISGLFMSVLYPTINSKGISCFPKAEHGSVSGVILFFTCVSAVIAPWMMG
LISDRFGDAVYGFALATGLAALLAVLAVLNLVFDPSRARLEARQDADYVVP