PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01337 (540 amino acids)

SeqID: CCNA_01337 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01337
MGDEAIHLGDYDYIVVGAGSAGCLLANRLSADPRRRVLLLEAGGDDNWIWFHVPVGYLFA
IGNPRADWMLETTPQAGLDGRVLAYPRGKVIGGSSAINAMIYMRGQARDYDGWRQRGLAG
WGWPDVLPYFLKHEDHIDPRGEHHRAGGEYRVEHPRVRWDVLDAIRRAGEQAGIAQVDDF
NGGDNAGSSYFQVNQRAGRRWSTATAFLKPVLSRPNLRLVKGVEVERLIIDGKRVRGLRG
RRGGAAVTASVSGELILAAGAIGSPVILQRSGIGRGETLSRAGVAMVHDLPGVGANLQDH
LQIRPVFKVSGVRTLNTDYANLFRRAGMGLDYLLRRSGPLTMAPSQLGMFCRSGPEYESA
NLEFHFQPLSLDRWGEGLHRFGAVTASVCNLRPSSRGAVSLSGPGLEHSPRIDPNYLATE
EDRRVAVESLKWARRIMGQAALAAYAPEAFRPGPEVDGDAALLAAAKALATTIFHPVGTA
AMGADGDPLAVLDARLRVRGVEGLRVIDASAMPTITSGNTNAPTVMIAEKGAAMILEDSR