PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01508 (261 amino acids)

SeqID: CCNA_01508 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 84028140: Cystine-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    Cytoplasmic            0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01508
MRFPARRAVLSGLGLALLAACGKKPDAGASGWDRIKASGKLRVGLEGTYPPFNFQDKSGQ
LAGFEVDFAKALAEQLGVKAEFSPAPFAGLLGSLESGRIDVVINQITITPDRQAKYDFSE
PYTVSGIQIIALKGKPAPTGPEGLTGKKVGVGLGTNYEQWLRANVPTADVRTYDDDPTKY
QDLRAGRIDAVLNDRLVAADFVKTSPEFVASGQPFAAQGSGVAMQKDPALKVVINQAINA
LRANGKLAAISQQWFGMDVTQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory