PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01905 (1207 amino acids)

SeqID: CCNA_01905 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01905
MFDKVLIANRGAIACRIIRTLRAMGVKSVAVFSDADAGSLHVSMADEAVRLGPAPAAESY
LRADLVLAAAQATGAQAIHPGYGFLSESAAFAQACEDAGVTFIGPSADNIRAFGLKHTAR
DLAQAHGVPLAPGTDLLTDPAAALAAAQRIGFPVILKATAGGGGIGMRVCESAEAVEEAF
AAVRRLATGNFSDGGVFLERYVHKARHIEVQVFGDGAGRVAALGERDCSLQRRNQKVVEE
TPAPGLPAATRTALLDAAVRLAKAANYRSAGTVEFLYDADRDDFFFLEVNTRLQVEHGVT
EQVTGVDLVEWMVRGAAGDFSFLDTPPPAPRGAAIQVRLYAEDPAQDYRPSAGVLTEVAF
PEGVRADGWVVDGTEVSAFYDPMLAKLIVIAEHRPAAVAALQAALDATRLAGIETNLDWL
RTVTRSQPFVSGEVSTRALETIAWAPDTIQVLSGGPATTVQDWPGRRGYWDVGVPPSGPM
DALAFRLGNRLLANPDDAAGLEITALGPTLKFNRPATLCLTGARFDARLDGVAVEPYTPF
DVRPGQTLKIGRVVEAGLRGYLLLRGGLDVPTYLGSRSTFTLGGFGGHAGRNLTAGDVLR
LLPAPEAPPGALDEPLRPALTKTWTIRVLPGPHGAPDFFTPADVAMIGGTDWKVHYNSNR
TGVRLVGPKPEWARRDGGEAGLHPSNIHDNAYAIGAIDFTGDMPIILGPDGPSLGGFVCP
FVIIEADLWKAGQLAPGDTVRFAVVDDPTAAAALETQEALIAQLGAAPPRPAPAVIDVEA
SPILRELPQDGHRPRVLYRRQGDQHLLVEYGPIVLDLELRLRIHALLLDLQAQALEGVID
LTPGIRSLQVHYDSRRLSQARLLDILVAAEDRLGGLDDFEIPSRVVHLPLSWKDPAIYQT
IDKYMQAVRDDAPWCPDNIEFIRRVNGLNGIDDVQKIVFDARYLVMGLGDVYLGAPVATP
VDPRHRLVTTKYNPARTWTPPNVVGIGGAYMCIYGMEGPGGYQLFGRTIQVWNTWRQTDA
FTDGKPWLLRFFDQIRFFPVSAEELVEWRRDFPLGRRAIRIEEETFRLSDYRRLLAENAE
SIAAFQSRRQAAFDAERADWEAKGEFARVEALSGVAEADDAVAAVEVPAGADLVEAPLGG
NVWKVLVEPGQAVEAGAVIAIIEAMKAECDVATPTAGVVSAVYAQPGQPIAAGAPVIAVT
PVAEAAA