PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01990 (339 amino acids)

SeqID: CCNA_01990 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 417257: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01990
MPDPRFFDSLGPALLSELAQAGAATLADAALGERVITHAAPLDASDAQAITFFSDAKRKD
AAASTRAGACFVRPEHQGFLPPTCAALVTGRPQAAWAAAANRLHAPRRHEAGAPSLHPDA
ALEDGVALAPNVTIGQGASIGRGTRIGPGVVIGPGVVIGRYCRIGANAVIGFAMLGDNVA
ISAGAVIGEAGFGAALGPRGMVDLPQLGRVVIQDNVTLGANSCVDRGAFGDTTIGENTKI
DNLVHVAHNVRIGRNCVLAAYTGVSGSTVVGDGVAFGGKAGVADHLNIGSGASIGAAASV
FKDVPDGETWTGFPARPLKRWLRETAWLSRMAGGRGTRG