PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02252 (530 amino acids)

SeqID: CCNA_02252 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02252
MPKLNSVIDASSDAFAKNAAHNRALVDELRAKVAQAALGGPESARERHTARGKLLPRERV
ERLLDPGSPFLEVGQLAACDLYNGEAPGAGMICGVGRVSGREVMIVANDPTVKGGAYFPM
TVKKHLRAQEIAAQNRLPCLYLVDSGGANLPHQAEVFPDRDHFGRIFFNQARMSAASIPQ
IACVMGSCTAGGAYVPAMSDETVIVRNQGTIFLAGPPLVKAATGEVISAEELGGAETHGR
RSGVVDHVAENDEHALEIVRSIVANLNTTKPDQLVLADPEPPAYDPEELYGIVPTDVRAP
YDVREVIARIVDGSQFDEFKALYGTTLVCGFARIWGQPVAILANNGVLFSESALKGAHFI
ELACKRKIPLIFLQNISGFMVGGKYEAGGIAKDGAKLVTAVASAEVPKFTVLIGGSFGAG
NYGMCGRAYSPRFLFTWPNSRISVMGGEQAASVLATVHRDAAKWSPEEAEAFKAPIRQRY
EDEGNPYHATARLWDDGIIDPAQTRDALGLAISASLNAPIPETTFGVFRM