PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02326 (405 amino acids)

SeqID: CCNA_02326 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02326
MSTATSSTTSQHHIMGVYNRAPLAFERGRGARLISTEGEEYLDCVAGIATNGLGHAHPAL
VEVLKAQAEKLWHVSNIYRIPEQEELADALCANSFADVVFFTNSGTEAVECALKTARKYH
SANGQPERIDIYGFDGSFHGRTYAAVNASGNPSYVDGFGPRLPGYSQLTFGDHDAIKAAI
ASPTTAAIIVEPVQGEGGARSIPTQCLVGLRQLCDEHGVLLIYDEVQCGMGRTGKLFAYE
WAEGGEPHIMAVAKALGGGFPIGACLATTEAAKGMTVAAHGSTFGGNPLAMAVGKAALEI
IKSPETLDNVKTVSGFFTQQLNGLKDRFPDVIVDVRGKGMLIGVKLIPNNRDFMVLARDE
KLLIAGGGDNCVRLLPPLNLTIEEASEAIAKLEKACEAARAKAAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory