PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02352 (724 amino acids)

SeqID: CCNA_02352 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            4.93
    CytoplasmicMembrane    4.92
    Cytoplasmic            0.07
    Extracellular          0.07
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02352
MDGEILRDPTRRFVLQSGAAVGGGLLLSFTMSSEGQAAGDTKVNAYVRIASDGKVTIASK
VPEVGQGIKTALPMLIAEELDVDWSAVTVEQAIADTKIYGRQVAGGSMATTLEYDGLRRV
GATVRALLIAAAAARWNVPADSLKTEPGFVVDAAGKRRASYGELAQAAAALTPPDPKSLT
LKDPKAFRIIGKSHKSQNLDAIVTGQPTYGIDVRLPGMLFAAFAKAPVYGAKVASVDLAL
AKAVKGVRDAFIIEGGTNLQGLLPGVAVVADSWWAARKGREALQIQWAEHPTASQSTVGF
AAKAAELAAAPPHRNLHNDGDVEAALKGAAKTVSAAYSYPFIAHAALEPQNCTAHVKDGK
VEIWAPTQNPESGRALVARALNVDPSAITIHLIRGGGGFGRRLMNDYMVEAAAIAAKVNA
PVQLIWTREDDMQHDFYRPGGWHNLTAGLDAKGGLTAWKNHFITFGEGETFNTAAAMNAT
QFPCRAVANYRHDVSVMPLGFPTGFLRAPGNNAFGFVIQSFTDELALAAGKDPVAFRREL
LGEPRLLGEPGKGDSFHTGRMRGVLDLVAEMSGWGRKVPKGTGLGVACHYSHLGYVAVVM
QVTVKDGAVKVDKVWAAADVGRQIVNPSGADQQMQGSILDAIGSTLYQSITFENGAATNS
NFGDFPLLRMADAPPVEVRYKLSDNNPTGLGEPAYPPAPAALCNAIFAATGKRIRSLPIG
DQLA