PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02747 (270 amino acids)

SeqID: CCNA_02747 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02747
MFMVARRAVLVLGLAAMSVAACGPKAPKASDPNTLTVAATAVPHAEVLEFIKPKLAQQGL
TLEIKVFNDYVQPNTQVAEKRIDVSYFQTLPYLESFNRDKGANLIPLQGVHVEPIGTYSA
KWKSIAEVPNGATIAIPNDASTEGRALILLAKNGVIAIKDPKNPLTSLRDITSNPKNLKF
KELEAPALPRVLNQVDLAVINTNYALDAKLNPSKDALIIEDKTSPYVNYLVGRPDNKDDP
RVKKLAAALTTPEVKAFIEQKYAGAVVPAF