PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02891 (628 amino acids)

SeqID: CCNA_02891 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02891
MPGPRSNPLPFRKRTDLKARTPQTPRMNLGPGIGFAALTCRRGGRGIGMLSGSGHEHGAC
PGGIVSPPQNAPQIPLTISARPATFDIDLTSEPRSSDLTMHRLTPALAALLLGLAATSAH
AEPAPRIAKIDGVQRLLVNDKPYLILGGELGNSSSSDLKDLSGHWAVMKAANLNTVLAPV
AWEQVEPVEGKFDFTVLDGMIQQARAHEMRLVLLWFGAWKNSMSTYTPAWVKRDPARFPY
ARTGEGKAVEILSASYPATRDADAKAFAAMMAHLKAVDGDKRTVLMVQVENEIGMLPEAR
DRTKAAEADFNKPVPAAALKVLSGQIKGKKAGTWEEVFGASLATDELWQAWTFGRYVEAL
AAAGKKAYDLPMFVNAALPRPGAVPGGYPSAGPLPHLIDLWRAAAPSLDMLSPDIYYPNF
TEWMPPYDRPDQPLFIPEADQAGKTPAPGNAFWAIGEHDAIGFSPFSIEHLPPEGVKTLG
AAYRLLDQLTPLITTHDGGKTMRGFRAPVAYDGTVDLTPRKASFGPWDFTVTVVDPWTPK
DKQDYAAHGGLVIQTGADEFIVAGRGITMTFATKDGSVGLETVRELRFENGQWVDGRWLN
GDQTHQGRHIRLPPTEFGVQRVRLYRYQ