PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03162 (481 amino acids)

SeqID: CCNA_03162 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03162
MPKTTKTPADNAAEPVATPAERAHGVIDAIVDPLTSALKRAGLRRAQKSAGESDQASATP
AKAATGAGKPGLAISPLAVPFPTIPPIAGVEIATGRAGFYKHEREDLLLMRFAEGTSAAG
VFTRHGVGSAPVDWCKRQLAATGGADVRALVVNAGCANSFTGKPGADAVRRVATAVGKRF
DCRQRDVMMASTGVIGVILDDSKITARLPEVESRLKADAWAEAGRAIMTTDTFPKGAYAT
AVIDGHEVKIAGIAKGSGMIAPDMATMLAFVATDAAIAPAALQTLVSLYTRTTFNCVTVD
GDRSTNDTLLLFATGQSGAPKIHRAGDKRLADFREKLEGVLLDLALQLVKDGEGATKFVK
ITVNGAESPASARKIARTIAESPLVKTAFAGEDANWGRIVMAVGRADEPVAREKISVKFG
DLYAARDGLISAEYDEAKMSAYVKNQAFEVSVDVGVGRGSATVWTCDLTKQYVAINGDYR
S

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory