PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03177 (662 amino acids)

SeqID: CCNA_03177 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03177
MSAKPYQHAPDPPWIFRTYAGHSTAEKSNALYRANLAKGQTGLSVAFDLPTQTGYDPDHI
LARGEVGKVGVPISHLGDMRQLFSEIPLEKMNTSMTINAPAAWLLAMYVALADEQGADRK
LLQGTTQNDLIKEYLSRGTYIFPPGPSLRLIGDMIAWCYREVPKWNPMNVCSYHLQEAGA
TPEQELAFALATAISVLDTVKAGGQVPDEDFEIVASRISFFVNAGVRFVTELCKMRSFTK
LWDQILLERYGVQDPKARRFRYGVQVNSLGLTEQQPENNVYRILIEALAVTLSKDARCRA
LQLPAWNEALGLPRPFDQQWSLRLQQVLAYETDLLEYEDLFDGSHVVEAKVAELSKGALA
QLTLIDEMGGAQNAIDYMKSELVASNAKRVRAVETGEMTVVGVNRWTETEASPLSAGESA
IETVDPRLEAGVVERIKAWREARDAVAVEAALAALKAAAREGRNVMEPSIAAAKAGVTTG
EWSGALREVFGEYRGPTGVAVVVSTGEAEDVEAVKREVERVSELLGRTLTYLVGKPGLDG
HSNGAEQIATRARACGMEVVYDGIRSTPEEIVRRAKESRAHVVGLSILSGSHLDLVQEVI
RVMRAEGLGHIPVVAGGIIPPEDALILKQMGVARIYTPKDFKITQIMGDVVKLVEATALT
EA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory