PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03215 (471 amino acids)

SeqID: CCNA_03215 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597296: probable transcriptional regulator[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03215
MKSPSYNRTIDPYITRSMYGYAVMPATKGSPNPAAAWLRRVEAFDGPAYRRIALALEAAV
AEGELQAGDQIPAQREVARLIGVDFTTVTRAYGLARERGLIEGTAGRGTFIRLRINEDEA
GLIDLSMNLPPPPQGLNLAGLLQDATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAP
TLGPVDPGRVVVTGGAQTALSALLDYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPL
DDEGLQPEALAQLVAQHGPRLICCTPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDA
YGLLPASPAPALAALWPEGVYHVATTAKALSPGLRLAYVVAPPGCAEGFAQALHAIAQMP
APLMAGIVTQWIRDGVAAKVLAGVRSEAVARRALAATLLPRAVGDAESLHVWLAGAEAPP
AARERGLALVGANAFRAPGVTGEGLRISLGATAKRAALTQGLKALATLSAP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory