PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03229 (429 amino acids)

SeqID: CCNA_03229 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03229
MTAQTPRPYPSPYGRGNWYADTVTDVPASPPLDGDVAAEVCIIGAGFTGLGAALALGSRA
VVLEAGRIGCAASGRNGGQVHTGQRRDQAWLEKTVGRDDALALWRLAEEARAHFASLVTA
IDCDWRPGMIHARHKPGGEAEDADYLALMADRYGYDQLELIGETALAHELGTDVYHGGLA
DHGGGHVHPLKLAQGMAAQARAAGAVIHENTRADAWRREGGKIVVETGGGRVTCDQLILS
GDGLLNRMAGPAQARVMPINNFIAVTAPLGALADEIIRSNAAVSDSRFVVNYFRKTPDGR
LLFGGGENYRPGFPHDIAGLVRKNLAKIYPRLADVEITHAWGGTLGITFSRMPFVGEVAQ
GVRVAAGYSGQGVMLAPYVGKLLAEAALGETGPVDLLSRLPTPPFPGGRLLRWPLTVAGL
SWYALRDRL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory