PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03239 (368 amino acids)

SeqID: CCNA_03239 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15595498: polyamine transport protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03239
MSTITQRGLNKAGLSRRSLLTATGAAAIGLTFTACGEKPKAAPGAEEAKLNFYNWDTYIG
ETTLGDFKKATGIDVNMSLFATNDELFAKLKAGNPGFDVVVPSNEFVTRMSQGGLLEPLD
HAKIPNMKNIDPSFLNPEFDPGRKFSMPYTWLLLGIGYRKSKVKGVPDSWKWLFDSDQYK
GRIALLSESADLVRLSAKYLGHSVNNIPQDMLPKIEQMLIKQKPFVKAFHDDNGQDMLMS
GEVDLVLEYNGDIAQAMKEDPDLDFVVPKEGSLINSDTLCIPKGAPRPNNAHAFINYLLD
AQAGAEISKTILYPTPNAAAKALMPEDYKNNPVIFPPADVMAKCEYGAFEGAEKASQYEE
LITRVRAA