PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03278 (372 amino acids)

SeqID: CCNA_03278 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03278
MSEFDFDVVVVGAGAVGLACGYALSRRGLVVAVLEEQGRIGEGVSSRNSEVIHGGLYYPT
GSLKAKLCVQGRRALYAFCDAHKVPYKKCGKLVVATSEDEIARLDTIWEQALANDVEGME
RLTGAQARALEPGLNAHAALLSPESGVFASHDYMLALQGEIEAAGGAVVLSTPFEGAEPL
AGGGFRVRAGGAEPTDLTCRLLVTAPGLSSQAVAGRIEGYPAEQIPKAHFGKGIYFRLSG
KAPFQRLIYPPPIHGALGTHYRNDMGGQAVFGPDLEYVAAPDYSVDPAKADAFAAYIRKF
WPDLPADRLVPDYAGVRPKLHGPGEPQPDFQLRGVEDHGLAGLMALFGIESPGLTSSLAI
GETVAERLCGAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory