PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03279 (278 amino acids)

SeqID: CCNA_03279 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730535: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03279
MAKNPFQDKVCIVTGAASGLGRALSAQLAEAGATLIIADINFPAAEELAHRMNQLGVTAK
PVRTDVTLSESVRQLIEGTAAEFGRIDYLFNNAGIAVFGEIRDLSLDHWRRVIDINLMGE
IYGIHYAYPQMIKQGFGHIVNVASGFGMAPGPVNSPYVASKFAVFGLSHALATEARAFGV
HVTVACPGFIKTPLVDNIHCVNAAPADVLANIPVAMVPVDRAANIILTGVAKRKMVIAFP
GYVGVLAFIHRFLPAVWDSMGKGEIARFRKIRKDPAVS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory