PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03292 (517 amino acids)

SeqID: CCNA_03292 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03292
MTLAAMIAADYGTIGDILRERARENPDRLAVVMETGEAVTYAQFDALVDRVAAALQRDGV
APGEAVAVCALSSIPYAALFLGALRAGVAVAPIAPSSTPESIAGMVADCGAKLFFLDAGV
AEAQKPAPVPVRPIALDGSSAGQAFDAWLAPEDATPTPVEIGPKHPFNIIYSSGTTGTPK
GIIQSHGMRWKHIFVGDAIGYGHTPVSLLSTPLYSNTTLVCFFPTLAGGGTVVLMKKFDV
VRYLELAAKHRITHTMLVPVQYRRLMEHPDFDRYDLSSTRMKFCTSAPFAADLKAQVLKR
WPGGLVEYFGMTEGGGTCILMAHEHPDKLHTVGRPAPGHDIRLVDEDGRQVGPGVVGEIV
GRSASMMNGYHGRPDKTAEATWVSPEGWTFIRTGDVGRFDEEGFLTLMDRKKDMIISGGF
NIYPSDLEAVLVQHPAVFEAAVVGVPSDAWGETPVAFVALKSSQVAEADAIKTFVNGQVG
KTQRLAEVVVVDSLPRSHIGKVLKRELRDSWQNSPSQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory