PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03322 (526 amino acids)

SeqID: CCNA_03322 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03322
MTAPRVLIADKLSPAAVEIFKNRGLAFDIKTGLSKDELIAVIGDYDGIAIRSGAKLDKDV
IAAANKLRVIARAGIGVDNVDIPAATAKGIVVMNTPFGNSITTAEHAIAMMFALARQIPA
ADVSTQGGKWEKNRFMGVELYAKTLGLIGAGNIGGIVADRALGLKMKVVAYDPFLSPERA
VEMGVEKVELDELLARADVITLHTPLTDKTRNILSAENLAKTKKGVMIVNCARGGLVDEA
ALRKLLDEGHVGGAAFDVFTVEPAKENPLFGSDKVVATPHLGASTNEAQENVALQVAEQV
SDYLLTGAVTNALNSPSITAEEAPKLKPFVALAEKIGAFAGQMVDFGVKAIDIAYEGEVS
NLNVKPMTSAALAGVLKPMLAEINMVSAPAIAKERGITVSESRQEVSPTYDSLMRVTITT
EKGKRAFAGTVIAGAPRIVEVKGMELDAAFSPAMLYVNNLDKPGFIGALGMLLGEAGVNI
ATFNLGRVSADEDAIALVGVDQAPDAGLLAKIQALPHVKEARALTF