PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03383 (617 amino acids)

SeqID: CCNA_03383 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81855910: Putative multidrug export ATP-binding/permease protein SAV1866]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03383
MMTDANSGDQKVEGRPGAGAELVQGMTEAGARRPRRKDIRPLAHLLPFVIAHKGDGLAAG
FFLLFSTAATLGLTYAFKNVIDHGFSKGQDAAINSAFVGLGAVALVLALATALRFFFITR
LGERVVADLRRKLYGHTLSLDQPYFLKTRTGEVLSRLTTDVALVEQLVGASISIALRNIL
NLIGGLTAMAVVSPKLAGFIVLMVPVILAPMFLVGRRVRKLTVTAQDRFADAVGYAGESL
DALETVQAFGRESASSGRFGAAVEAAYKASVRRITTRATMTAMVITLAFGGITLLLWTGA
RLVLAGEMTGGTLAQFAMLAVMAAGSIGALGEVWGDVQKASGAMDRISELLNAKPDIAAP
PQPKTLPVPGQGEIAFENVVFAYPGRPDLPALNGFDLRVKPGETVALVGPSGAGKSTVLR
LLLRFYDPQSGCILLDGVNLRDAEPAEVRARMALVAQDSPLFSGSAMDNIRFGRPDATDE
QVRAAADAAQATGFLSALPEGFDTPVGERAKTLSGGQRQRLAIARALVREAPILLLDEAT
SALDAESEQLVQQALATAMEGRTTLVIAHRLATVLKADRIVVMEEGRVVEQGAHAELFAK
GGLYARLARLQFGVEAA