PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03543 (424 amino acids)

SeqID: CCNA_03543 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2507237: Gamma-glutamyl phosphate reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03543
MDDAGASLQAIMAGMGRTAREGARALRLATPEQRTAAIQAMAVAIREDADAILTANAKDL
ARAEANGVSGPMLDRLALDAARLEGVAAGVEAVAAVPDPVGVATSRWTRPNGLDIARVRT
PIGVIAMIYESRPNVTADAAALCVRSGNAVILRGGSECIHSNLAIHAAIARGLQKAGLPT
AAVQAVKTPDRAAVGMILAGLDRTIDLIIPRGGKSLVARVQAEARAPVLGHLEGLNHVFV
HAAADLKKAVEVVVNAKLRRVSVCGSAETLLIDQAAADKLLPPIADALIKAGCELRGDAA
ARAIEPTMKKATVEDWTTEYLAPILSVAVVDGVAGAARHIASYGSGHTDAIITEDAAAAE
AFIAEVDSAIVLVNASTQFADGGEFGFGAEIGIATDKLHARGPVGAEQLTTFKYVVRGTG
QTRP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory